nodalpoint.org - rss aggregator - Comments

You might try out MedWorm too

frankie — Mon, 19 Nov 2007 00:17:08 -0500

A nice introduction to Yahoo Pipes. You might also try out MedWorm which allows you to create RSS feeds from queries on its sources - which currently includes over 5000 medically related RSS feeds (sorry, I too am recommending my own site - which is where I came across this posting, since I like to keep a check on blog postings tagged with 'RSS' - I hope you may excuse this since the site is highly relevant to this posting).

Scintilla

alf — Fri, 16 Nov 2007 05:43:28 -0500

For the science side of things you could give Scintilla a try (sorry for plugging my own site, but it is designed for this kind of thing: if it doesn't suit the way you work then let me know).

that works too,,,

agbiotec — Thu, 15 Nov 2007 13:58:15 -0500

,,, but on a second thought, with the Pipes you can mashup and filter RSS from any source,,, so in addition to having keyword-filtered articles from papers, you can also have blog posts, newgroups and whatever else RSS content cleansed and delivered all in a single feed,,, I guess you could also do that by searching within Google reader after you aggregate your feeds there,,,

What about PubMed?

dbtodd — Thu, 15 Nov 2007 12:32:41 -0500

If your articles of interest are there of course (and a big if here). I have a couple saved searches in PubMed and subscribe to the feeds for those searches. One of these is a long list of scientists in my field for example. I subscribe using Google Reader so new papers come through every day and scanning through them in Reader is much easier than using PubMed directly. I then use a set of labels to prioritize articles for follow up and importing into the excellent pdf manager Papers.

Pipes are pretty nifty

pwnedd — Thu, 15 Nov 2007 10:33:28 -0500

Pipes are pretty nifty indeed. I created one for the same purpose myself a little while back for filtering items from a few different journals. I've since thought of an even easier way to search through a large number of journal feeds, but have not had the time to blog about it lately because I've been so caught-up in school work. Basically though, the idea is to combine google reader + yahoo pipes. Yahoo pipes is powerful, but it is a pain to handle a high number of feeds. It is very easy to add feeds to google reader however, so rather than adding the feeds directly to yahoo pipes, you could instead create a google reader account just for journal feeds. Give them all a tag like "article," and then feed your google reader "article" feed (which will include all items from all of the journals) into Yahoo pipes. This way you will only have to deal with a single feed in Yahoo pipes, and adding new journals becomes trivial.

Not bad, huh? :)
Keith

statomics.com

DRB — Sat, 21 Jul 2007 22:24:26 -0400

Neil, please add this feed:
http://statomics.wordpress.com/feed/

Categories: bioinformatics, computational biology, statistics, genomics

My Feed

paraschopra — Thu, 19 Jul 2007 06:40:36 -0400

BioHacking feed is here:

RSS .92: http://www.paraschopra.com/blog/rss/biohacking_rss1.xml
RSS 2: http://www.paraschopra.com/blog/rss/biohacking_rss2.xml
Atom: http://www.paraschopra.com/blog/rss/biohacking_atom.xml

Regards,
Paras

---
www.paraschopra.com

Thanks Neil

Greg — Thu, 19 Jul 2007 04:11:06 -0400

Thanks Neil for setting this up. Originally I chose not to set up the aggregator due to resource usage issues. Don't worry this is not a problem anymore as Linode doubled the capacity of the plan I'm on for no extra cost. So with the upgrade to Drupal and the extra RAM, the site is quite speedy. Of course Linode is now highly recommended if you're looking for UML host with excellent choice of distros :)

Thanks

suicyte — Wed, 18 Jul 2007 07:52:09 -0400

This looks useful! If you like, my feed is http://suicyte.wordpress.com/feed/
suitable categories would be bioinformatics and/or genomics

thanks neil

Duncan — Wed, 18 Jul 2007 05:28:54 -0400

thanks for doing this, looks useful.

http://network.nature.com/blogs/feed/duncan

Thanks

Animesh — Wed, 18 Jul 2007 02:15:10 -0400

Thanks to Deepak for the the suggestion and Neil for implementing it.
My blog feed: http://computationalbiologynews.blogspot.com/feeds/posts/default
Category: Bioinformatics, News, Computational Biology

Wonderful

mndoci — Tue, 17 Jul 2007 23:30:18 -0400

Neil,

This is great. Thanks!!!

My Blog: http://mndoci.com