Over the last several years, our lab has constructed a variety of programs and toolkits using Python, including: our main sequence analysis processing pipeline; a Web interface to the processing system, including a Web service API; a prototype of our current GUI sequence visualization system (written in Jython); and Python wrappers for two C++ toolkits that are in development.
A comprehensive article showing how Python is used for real world bioinformatics application and pipeline development. From Py - The Online Python Zine.
